Here you go:
NOTE:
Here I use on 6 fields of BED file, but you can use this script as a basis and allow more fields to be used.
awk 'BEGIN{OFS="\t"}{ print $1,"qualimap",$4,$2,$3,$5,$6,".","bed" }' CpGIslandsByTakai.human.bed > file.gff
NOTE:
Here I use on 6 fields of BED file, but you can use this script as a basis and allow more fields to be used.
1 comment:
except it is wrong. bed is 0 index based and gff is 1 index based. (Note to future googlers)
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